Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs4905054 chr14:93613702 A/T 6.25E-5 291 21.33 18.75 8.4 KM Plot
CESC rs4933394 chr10:88148264 T/C 4.01E-14 291 3.33 24.6 21.12 KM Plot
CESC rs4934202 chr10:88163933 T/C 2.83E-14 293 3.33 24.3 21.13 KM Plot
CESC rs4934203 chr10:88163934 A/C 2.83E-14 293 3.33 24.3 21.13 KM Plot
CESC rs4934209 chr10:88203390 A/G 1.18E-14 298 3.33 24.9 21.17 KM Plot
CESC rs4962047 chr9:136262916 T/C 9.08E-5 288 21.2 25.57 11.6 KM Plot
CESC rs497344 chr11:125470524 T/C 2.3E-6 290 3.47 26.47 21.2 KM Plot
CESC rs4979156 chr9:115567841 T/C 4.42E-9 298 8 19.43 23.12 KM Plot
CESC rs4979172 chr9:115627268 T/C 3.19E-5 299 8.43 19.43 23.12 KM Plot
CESC rs4979175 chr9:115630784 A/G 3.56E-5 296 4.22 21.18 23.12 KM Plot
CESC rs500450 chr11:125518345 C/T 5.75E-6 295 3.47 26.43 21.13 KM Plot
CESC rs511421 chr17:72887458 C/G 2.69E-5 296 15.33 28.3 21.17 KM Plot
CESC rs511645 chr17:72887536 C/T 2.03E-5 296 16.87 27.9 21.17 KM Plot
CESC rs513167 chr17:72887646 C/T 2.48E-5 297 15.33 27.9 21.17 KM Plot
CESC rs513209 chr11:125467144 C/A 4.19E-6 289 11.67 26.47 21.2 KM Plot